ProteoIQ Citations
Karlie A. Neilson, Naveid A. Ali, Sridevi Muralidharan, Mehdi Mirzaei, Michael Mariani, Garine Assadourian, Albert Lee, Steven C. van Sluyter, Paul A. Haynes.
Less label, more free: Approaches in label-free quantitative mass spectrometry.
Proteomics, 11, 535-553 (2011)
Tomas Takac, Tibor Pechan, Jozef Samaj.
Differential proteomics of plant development.
Journal of Proteomics, 74, 577-588 (2011).
Paul N. Ulrich, Veronica Jimenez, Miyoung Park, Vicente P. Martins, James Atwood III, Kristen Moles, Dalis Collins, Peter Rohloff, Rick Tarleton, Sivia N.J. Moreno, Ron Orlando, Roberto Docampo.
Identification of contractile vacuole proteins in Trypanosoma cruzi.
Plos One, 6(6), e18013 (2011).
Robert Graham, Michael Sweredoski, Sonja Hess.
Stable isotope labeling by amino acids in cell culture (SILAC) - an introduction for biologist.
W. D. Stamer, E. A. Hoffman, J. M. Luther, D. L. Hachey, K. L. Schey.
Protein profile of exosomes from trabecular meshwork cells.
Emine Gokce, Genna L. Andrews, Ralph A. Dean, David C. Muddiman.
Increasing proteome coverage with offline RP HPLC coupled to online RP nanoLC-MS.
Journal of Chromatography B, 879, 610-614 (2011)
Joseph R, Srivastava O. P, Pfister R. R.
Differential epithelial and stromal protein profiles in keratoconus and normal corneas.
Genna L. Andrews, Ralph A. Dean, Adam M. Hawkridge, David C. Muddiman.
Improving proteome coverage on a LTQ-Orbitrap using design of experiments.
Journal of the American Society for Mass Spectrometry, 4, 773-783 (2011)
Timothy S. Collier, Prasenjit Sarkar, William L. Franck, Balaji M. Rao, Ralph A. Dean, David C. Muddiman.
Direct comparison of stable isotope labeling by amino acids in cell culture and spectral counting for quantitative proteomics.
Adam M. Hakridge, Rebecca B. Wysocky, James N. Petitte, Kenneth E. Anderson, Paul E. Mozdziak, Oscar J. Fletcher, Jonathan M. Horowitz, David C. Muddiman.
Measuring the intra-individual variability of the plasma proteome in the chicken model of spontaneous ovarian adenocarcinoma.
David Muddiman, Genna Andrews, Derrick Lewis, Jaspreet Notey, Robert Kelly.
Part II. Defining and quantifying individual and co-cultured intracellular proteomes of two thermophilic microorganisms by GeLC-MS2 and spectral counting.
Matthew A. Humbard, Hugo V. Miranda, Jae-Min Lim, David J. Krause, Jonathan R. Pritz, Guangyin Zhou, Sixue Chen, Lance Wells, Julie A. Maupin-Furlow.
Ubiquitin-like small archaeal modifier proteins (SAMPS) in Haloferax volcanii
David Muddiman, Genna Andrews, Derrick Lewis, Jaspreet Notey, Robert Kelly.
Part I. characterization of the extracellular proteome of the extreme thermophile Caldicellulosiruptor saccharolyticus by GeLC-MS2
Olga Pechanova, Tibor Pechan, Seval Ozkan, Fiona M. McCarthy, W. Paul Williams, Dawn S. Luthe.
Proteome profile of the developing maize (Zea mays L.) rachis: potential roles of constitutive and induced proteins in resistance to Aspergillus flavus infection and aflatoxin accumulation.
Chin Fen Teo, Sampat Ingale, Margreet A. Wolfert, Galal A. Elsayed, Laszlo G. Not, John C. Chatham, Lance Wells, Geert-Jan Boons.
Glycopeptide-specific monoclonal antibodies suggest new roles for O-GlcNAc
Julie A. Thomas, Susan T. Weintraub, Kevin Hakala, Philip Serwer, Stephen C. Hardies.
Proteome of the large Pseudomonas Myovirus 201 phi 2-1: delineation of proteolytically processed virion proteins.
Caryn R. Hale, Peng Zhao, Sara Olson, Michael O. Duff, Brenton R. Graveley, Lance Wells, Rebecca M. Terns, Michael P. Terns.
RNA-Guided RNA cleavage by a CRISPR RNA-Cas Protein Complex
Gerardo Alvarez-Manilla, Nicole L. Warren, James Atwood, Steve Dalton, Ron Orlando, Michael Pierce.
Glycoproteomic analysis of embryonic stem cells: identification of potential glycobiomarkers using lectin affinity chromatography of glycopeptides.
Journal of Proteome Research 2009, 9, 2062-2075.
Punit Shah, James Atwood, Podila H. Mubarek, Maria Davis, Ron Orlando.
Comparative proteomic analysis of Botrytis cinerea secretome.
Journal of Proteome Research. 2009,8, 1123-1130.
Joanna Graham, Robert L.J. Graham, Raymond Beirne, Victoria E. McGilligan, Stephen C. Downes, Jonathan E. Moore, Tara C.B. Moore, Geoff McMullan.
The use of conjunctival swab for the proteomic characterisation of dry eye syndrome.
Journal of Proteomics Bioinformatics. 2008,1, 017-027.
Nicholas T. Seyfried, Leanne C. Husentruyt, James A. Atwood III, Qiangwei Xia, Thomas N. Seyfried,, Ron Orlando.
Up-Regulation of NG2 Proteoglycan and Interferon Induced Transmembrane Proteins 1 and 3 in Mouse Astrocytoma: A Membrane Proteomics Approach.
Cancer Letters, 2008, 263. 243-252.
Robert L.J. Graham, Ciaren Graham, Geoff McMullan.
Microbial proteomics: a mass spectrometry primer for biologist.
Microbial cell factories. 2007, 6, 26.
Patrick D. Curtis, James A. Atwood III, Ron Orlando, Lawrence J. Shimkets.
Proteins associated with the Myxococcus xanthus extracellular matrix.
Journal of Bacteriology. 2007, 189, 7634-7442.
Robert L.J. Graham, Mohit K. Sharma, Nigel G. Ternan, D. Brent Weatherly, Rick L. Tarleton, Geoff McMullan.
A semi-quantitative GeLC-MS analysis of temporal proteome expression in the emerging nosocomial pathogen Ochrobactrum anthropi.
Genome Biology. 2007, 8, R110.
Shaojun Sun, Karen Meyer-Arendt, Brian Eichelberger, Robert Brown, Chia-Yu Yen, William M. Old, Kevin Pierce, Krzysztof J. Cios, Natalie G. Ahn, Katheryn A. Resing.
Improved Validation of Peptide MS/MS Assignments Using Spectral Intensity Prediction.
Molecular & Cellular Proteomics. 2007, 6, 1-17.
James G. Rohrbough, Linda Breci, Nirav Merchant, Susan Miller, Paul A. Haynes.
Verification of single-peptide protein identifications by the application of complementary database search algorithms.
Journal of Biomolecular Techniques. 2006, 17, 327-332.
Robert L.J. Graham, Catherin E. Pollock, S. Naomi O'Loughlin, Nigel G. Ternan, D. Brent Weatherly, Philip J. Jackson, Rick L. Tarleton, Geoff McMullan.
Multidimensional proteomic analysis of the soluble subproteome of the emerging nosocomial pathogen Ochrobactrum anthropi.
Journal of Proteome Research. 2006. 5, 3145-3153.
James A. Atwood III, Todd Minning, Fernanda Ludolf, Arthur Nuccio, D. Brent Weatherly, Gerardo Alverez-Manilla, Rick Tarleton, Ron Orlando.
Glycoproteomics of Trypanosoma cruzi trypomastigotes using subcellular fractionation, lectin affinity, and stable isotope labeling. Journal of Proteome Research. 2006, 5, 3376-3384.
Robert L.J. Graham, S. Naomi OLoughlin, Catherin E. Pollock, Nigel G. Ternan, D. Brent Weatherly, Philip J. Jackson, Rick L. Tarleton, Geoff McMullan.
A combined shotgun and multidimensional proteomic analysis of the insoluble subproteome of the obligate thermophile, Geobacillus thermoleovaorans T80. Journal of Proteome Research. 2006, 5, 2465-2473.
James A. Atwood III, D. Brent Weatherly, Todd A. Minning, Becky Bundy, Cameron Cavola, Fred R, Opperdoes, Ron Orlando, Rick L. Tarleton.
The Trypanosoma cruzi proteome.
Science. 2005, 309, 473-476.
D. Brent Weatherly, James A. Atwood III, Todd A. Minning, Cameron Cavola, Rick L. Tarleton, Ron Orlando.
A heuristic method for assigning a false-discovery rate for protein identifications from Mascot database search results.
Molecular & Cellular Proteomics. 2005, 4, 762-772.