Statistical Validation in ProteoIQ
ProteoIQ is the only software that provides
statistical validation based upon both probability and false discovery rate estimates, each of which can be performed at the protein and peptide level.
Proteome Visualization in ProteoIQ
Powerful software to identify proteins of interest using multiple data visualization tools.
Protein Quantification in ProteoIQ
Powerful software for quantification by spectral counts and isobaric tag approaches with enhanced normalization functions, error estimates, and relative expression analysis.
ASMS 2008
Poster presentation at the 56th annual ASMS conference on mass spectrometry and allied topics. June 1-5, 2008, Denver, Colorado
ABRF 2009: Protein Isoform Resolution
Resolution and Identification of Protein Isoforms in Complex Genomes
ABRF 2009: Proteomic Comparisons of Embryonic Stem Cells
Proteomic Comparisons of Differentiating Embryonic Stem Cells: An in-vitro Model of Embryogenesis
Pittcon 2009
Resolution and Quantification of Protein Isoforms in Complex Genomes
PROTEOIQ User Guide Version 2.1
The help guide provides a detailed description of PROTEOIQ’s key capabilities.
PROTEOIQ Quick Start Guide Version 2.1
This quick start guide will help you get started using PROTEOIQ. For more detailed information see the PROTEOIQ user guide.
Software License Agreement
Save, Print, or View the PROTEOIQ end license agreement.
ProteoIQ Version 1.2 Release Note
Description of new features in ProteoIQ Version 1.2 and installation instructions.
ProteoIQ Version 1.3 Release Note
Description of new features in ProteoIQ version 1.3 and installation instructions.
ProteoIQ Version 1.4 Release Notes
Description of new features in ProteoIQ Version 1.4 and installation instructions.
ProteoIQ Version 1.5 Release Notes
Description of new features in ProteoIQ Version 1.5 and installation instructions.
ProteoIQ Version 2.0 Release Notes
Description of new features in ProteoIQ Version 2.0 and installation instructions.
How to Create New Hyperlinks
Tutorial describing the process of creating protein hyperlinks in ProteoIQ.
Grouping Database Search Results
The grouping database search results tutorials provides step-by-step instructions for creating a new ProteoIQ project. Learn how to organize search results and group them by sample and replicate.
How to use the Database Wizard
Learn how to organize and update you FASTA databases in ProteoIQ.
Managing Protein Sets
This tutorial provides a guide to creating and comparing multiple protein sets in ProteoIQ.
Data Analysis Approaches for Isobaric Tag Quantitation
This webinar provides a detailed overview of the most common data analysis approaches for isobaric tag quantitation and demonstrates how these methods can be deployed in ProteoIQ.
Getting to the Right Answers - a Non-Statisticians Guide to Validating Protein Identifications
The goal of this webinar is to give a non-statisticians guide to the most common statistical validation approaches for proteomics. We will discuss the pros and cons of each approach and detail under what experimental conditions each should be applied.
ProteoIQ 1.5 - Accelerating Proteomic Data Analysis
We are pleased to formally announce the release of ProteoIQ Version 1.5. In this webinar we provide an in depth description of the new features available in ProteoIQ 1.5.
Label Free Quantitation by Spectral Counting
In this webinar, our experts will provide a detailed overview of the most common data analysis approaches for spectral count quantitation and demonstrate how these methods can be deployed in ProteoIQ.
Harnessing the Proteome: ProteoIQ Quantitative Proteomics Software
Learn how successful researchers are using ProteoIQ to streamline their proteomic data analysis.
Enhancing SILAC quantification with the ProteoIQ Proteomics Software Platform
Learn how successful researchers are using ProteoIQ to improve the quality of their SILAC data.
Enhancing label free quantification with the ProteoIQ Proteomics Software Platform
Learn how successful researchers are using ProteoIQ to improve the quality of their label free quantification.
Statistical Validation - False Discovery Rate
Statistically significant proteins were determined at X% [peptide or protein] false discovery rate using the ProValT algorithm as deployed in PROTEOIQ (www.nusep.com).
Statistical Validation - Protein Probability
Statistically significant proteins were selected above a protein probability of X using the ProteinProphet algorithm as deployed in PROTEOIQ (www.nusep.com).
Quantification
Protein expression ratios were calculated using PROTEOIQ (www.nusep.com).
Comparative Proteomics
Protein and peptides unique to [insert biological sample] were determined using the difference function in PROTEOIQ (www.nusep.com).