• Find Differences in Protein Expressions Easily
• Use Spectral Counting to Quantify Protein Expression
• Automatically Calculate Standard Deviations
• Increase Accuracy with Normalization Functions and Error Reporting
Analyze Protein Expression Clusters:
• View proteins with similar expression patterns
• Annotate cluster plot with standard deviations
• Export for publication or to spreadsheets
Display Bar Charts:
• Render protein expression data in bar chart format
• Compare by spectral count, peptides, or sequence coverage
• Add error bars for publication
Create Scatter Plots:
• Compare spectral count abundances to one or more biological samples
• Monitor reproducibility using dynamic charts
• Find truly significant deviations in protein expressions
Create Heat Maps:
• Create customizable heatmaps
• Select which samples to display and the type of metric
• Choose formatting for the table
• Save heatmaps as images
• Use results in other software applications
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